CGDS granted continuing funding to extend our Patient-Centered WGS-Driven Pilot Study in Prader Willi Syndrome.

The study, which began enrolling participants in May 2021, uses whole genome and RNA sequence analysis to identify how variations in patients’ DNA influence the range and severity of PWS symptoms and response to treatments. Aiding patient cohorts and individual patients with rare, undiagnosed, or misdiagnosed disease is the primary focus of our expert team. We’re honored that FPWR chose our team for this study.

As part of the initiative, FPWR will return pathogenic variants in genes on the American College of Medical Genetics and Genomics Secondary Findings list (ACMG SF v3.0) to participants and has enlisted health technology company My Gene Counsel to help return these results in a safe and responsible way.

Congratulations to Dr. Tarun Mamidi!

We are thrilled to celebrate Dr. Tarun Mamidi, who graduated from UAB on Saturday, December 14th.

Dr. Mamidi defended his dissertation, “Improving Molecular Diagnosis Success Rates and Prognosis Prediction for Patients With Rare Diseases,” in June 2024.

He will begin his new role as a Bioinformatics Scientist at Children’s Mercy while continuing as a consultant in our lab.

We wish you continued success in your career, Tarun!

CGDS team publish findings relate to molecular characterization of Juxtaglomerular Cell Tumors with clinical collaborators.

Lobo J, Canete-Portillo S, Pena MDCR, McKenney JK, Aron M, Massicano F, Wilk BM, Gajapathy M, Brown DM, Baydar DE, Matoso A, Rioux-Leclerq N, Pan CC, Tretiakova MS, Trpkov K, Williamson SR, Rais-Bahrami S, Mackinnon AC, Harada S, Worthey EA, Magi-Galluzzi C.

Ten JGCTs from nine institutions underwent immunohistochemistry and whole exome sequencing. Our findings reveal significant morphologic heterogeneity, with JGCTs mimicking various kidney tumor entities. Despite concerning histologic features in three cases, patient outcomes were unremarkable, indicating that morphology alone cannot predict clinical behavior. We identified gain-of-function variants in RAS GTPases without additional recurrent genomic alterations. This represents the largest JGCT series characterized by whole exome sequencing, underscoring the potential role of the MAPK–RAS pathway.

CGDS Researchers Present Work at CSHL Biological Data Science Meeting

Two researchers from the Center for Computational Genomics and Data Science (CGDS) recently showcased their work at the prestigious Cold Spring Harbor Laboratory (CSHL) Biological Data Science Meeting, held November 13-16, 2024. This meeting, known as #CSHLData24, brings together experts from across the globe to discuss advances in computational biology and genomics.

Dr. Gurpreet Kaur, a Scientist III at CGDS, presented her project titled “Integrative Genomic Characterization of a Rare Pediatric Differentiated Thyroid Cancer.” This project is a collaborative effort to understand the genomic underpinnings of a rare thyroid cancer in pediatric patients.

Shaurita D. Hutchins, a PhD trainee at CGDS, presented a poster titled “Identification of Drug Targets in Pulmonary Arterial Hypertension Using Gene Expression Signature Reversal & Mechanism of Action.” Her attendance was supported by a scholarship from the JXTX Foundation, which “provides support for students to attend conferences in computational biology and data science.”

CGDS is proud to have its researchers contributing to discussions at leading scientific gatherings. The work presented at #CSHLData24 reflects the lab’s commitment to advancing computational biology.

Learn more about the CSHL Biological Data Science Meeting.

CGDS and Rosalution Featured in NIH Research Highlights

We’re excited to share that our lab’s work was featured in the NIH Research Highlights post on the University of Alabama at Birmingham’s (UAB) Center for Precision Animal Modeling (C-PAM). This recognition underscores our contributions to advancing precision disease modeling, a field at the forefront of personalized medicine.

C-PAM is one of three U54 centers established under the NIH Precision Disease Modeling Initiative, focused on creating advanced animal models for precision therapies targeting complex disorders like ciliopathies and Roberts syndrome. Our tool, Rosalution, plays a key role in these efforts, helping link unique human genomic variants to disease with high-throughput, cost-effective pipelines.

This recognition highlights our lab’s commitment to developing innovative tools that enhance our understanding of disease mechanisms and empower clinicians and researchers.

Read more about the initiative and C-PAM’s work here.

CGDS Trainee Presents at 2024 PWS Research Symposium

Brandon Wilk, a doctoral trainee in Genetics, Genomics, and Bioinformatics, gave an oral presentation at the 2024 Prader-Willi Syndrome (PWS) Research Symposium. His talk, “A Patient-Centered WGS-Driven Pilot Study: What Clinically Useful Knowledge Can We Gain from WGS?”, focused on the potential of whole-genome sequencing to provide meaningful insights for improving care in PWS. This work emphasizes the value of leveraging genomics to address patient-specific challenges.

Congratulations to Brandon for representing our lab and contributing to advancing PWS research!

CGDS Scientist Receives GREGoR Consortium Grant Award

The GREGoR Consortium has announced the recipients of the 2024 Deborah Nickerson Memorial Awards, celebrating initiatives to enhance workforce diversity in genomics research. Among the distinguished awardees is Dr. Gurpreet Kaur, a Scientist III at the Center for Genomic Data Science (CGDS), University of Alabama at Birmingham. Dr. Kaur has been honored with an educational award to support her professional development and contribution to the genomics community.

As part of this recognition, Dr. Kaur will participate in the Skills for Health and Research Professionals (SHARP) Training in Quantitative Genomics hosted by Columbia University’s Mailman School of Public Health. This training will bolster her expertise in quantitative genomics and align with GREGoR’s mission to drive inclusivity and innovation in solving unsolved rare genetic diseases. Congratulations to Dr. Kaur and all the awardees for their contributions to advancing genomics research!

Learn more about the awardees and the GREGoR Consortium’s efforts to support workforce diversity in genomics research: 2024 GREGoR Consortium Awardees.